Service Offering: Digital Biobank (open source) 1

All clinical open source data in one place

Service Offering: Digital Biobank (open source) 2

What is the Open Source Digital Biobank?

All currently available clinical open source data in one place – this is our goal to support developers in their search for relevant data for the training of AI-based innovations. Currently you can find an overview of data from the areas listed below. If you are interested in further areas, please contact us. We are continuously working on an extension.

Service Offering: Digital Biobank (open source) 3

Why Open Source Daten?

Open Source data, are a fast and inexpensive way to train AI. Even for complex applications, they can be used for initial feasibility studies.

Service Offering: Digital Biobank (open source) 3

Who should use open source data?

Open source data is particularly suitable for projects with low customer-specific requirements and low budget. We are happy to help you with any questions. Please contact us!

Service Offering: Digital Biobank (open source) 3

What should you be aware of?

The respective terms of use must be observed. The various terms of use, such as CC BY 3.0, are explained in more detail on the respective linked website.

Open source prostate datasets

NameModalityNumber of patientsNumber of scansFormatTerms of use
TCIA "Prostate-MRI"MR (with some PET/CT)2622.036DICOMCC BY 3.0
TCIA "Prostate-3T"MR (T2W)641.258DICOMCC BY 3.0
TCIA "PROSTATEx"MR (T2W, PD-W, DCE, DW)346309.251DICOMCC BY 3.0
TCIA "NaF Prostate"PET/CT964.535DICOMCC BY 3.0
TCIA "PROSTATE-DIAGNOSIS"MR (T1, T2, DCE)9232.537DICOMCC BY 3.0
TCIA "Prostate Fused-MRI-Pathology"MR (T1, T2, DW, DCE)
2832.508DICOMCC BY 3.0
TCIA "The Cancer Genome Atlas Prostate Adenocarcinoma (TCGA-PRAD)"CT, PT, MR1416.790DICOMCC BY 3.0
TCIA "Pelvic-Reference-Data"CT5813.644DICOMCC BY 3.0
Initiative for Collaborative Computer Vision BenchmarkingMRI (T2, DCE, DWI, ADC)12DICOMCC BY 4.0
Harvard NCIGT "Prostate Project"MR230PNGno information
TCIA "QIN PROSTATE"MR (T1/T2, DW, DCE)2225.981DICOMlimited access

Open source spine datasets

NameModalityNumber of patientsNumber of scansFormatTerms of use
UCI Machine Learning Repository Vertebral Column Data SetCT310with citation
SpineWeb "IVDM3Seg"MRI12NIFTIdata upon request, citation, will supply the data provider with copies of publications.
SpineWeb "xVertSeg challenge"

CT (lumbar)25MHDPDDL

Mendeley Lumbar Spine MRI DatasetMR51548.345DICOMCC BY 4.0
DeepSpine VerSe19CT160NIFTI
NIH "DeepLesion" (not spine specific, only key slices + context >60mm)CT4.42732.120PNGunrestricted
TCIA "LIDC-IDRI"CT thorax (+ partial CR/DX)1.006243.185DICOMCC BY 3.0

Open source brain datasets

NameModality RadioNumber of patientsNumber of scansFormatTerms of use
TCIA "CPTAC-GBM"CR, CT, DX, MR, NM, SC63154.476- DICOM
- SVS (Patho)
CC BY 3.0
TCIA "ACRIN-FMISO-Brain"CT, MR, PET45671DICOMCC BY 3.0
TCIA "QIN-BRAIN-DSC-MRI"MR49116.778DICOMCC BY 3.0
TCIA "Brain-Tumor-Progression"T1w (pre and post-contrast agent), FLAIR, T2w, ADC, DSC208.798DICOMCC BY 3.0
TCIA "1p19qDeletion"MR15917.360DICOMCC BY 3.0
TCIA "Ivy Glioblastoma Atlas Project (Ivy GAP)"MRI, CT39846.743DICOMCC BY 3.0
TCIA "RIDER NEURO MRI"MRI (T1, T2, DCI, DTI,
contrasted 3D FLASH/FLAIR)
1970.220DICOMCC BY 3.0
TCIA "The Cancer Genome Atlas Low Grade Glioma (TCGA-LGG)"CT, MR199241.183DICOMCC BY 3.0
TCIA "The Cancer Genome Atlas Glioblastoma Multiforme (TCGA-GBM)"MR262481.158DICOMCC BY 3.0
TCIA "REMBRANDT"MR130110.020DICOMCC BY 3.0
UCLH Stroke EIT DatasetCT, CT Angio, MR23NIFTI CC BY 4.0
Brain-developement "IXI DATASET"T1, T2, PD, DW600NIFTI CC BY 3.0
Harvard NCIGT "Intra-operative MRT Glioma Resection" & "Neuro_MRT_g" & "NeuroMRT"MRI (T1, T2, SPGR)131DICOM (IMA)public access
OASIS (1-3)MRI (+PET)1550citation, provide information on use of OASIS data upon request. If PET-Data is used, must be submitted to "Avid Radiopharmaceuticals" for review!
OpenfMRIPDDL
ADNI - Alzheimer's Disease Neuroimaging Initiative MR, PETfor the purposes of scientific investigation, teaching, or planning clinical research studies, IRB compliance.
CQ500CT nativ193.317DICOM ">CC BY-NC-SA 4.0
Johns Hopkins University Data Archive Head CTCT35DICOM ">CC BY-NC-SA 4.0
BraTS Multimodal Brain Tumor Segmentation Challenge ">CC BY-NC 3.0

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